yodh.bib

@article{azarjbo2007,
  author = {Azar, F S and Lee, K and Khamene, A and Choe, R and Corlu, A and
	Konecky S D and Sauer, F and Yodh, A G},
  title = {Standardized platform for coregistration of nonconcurrent diffuse
	optical and magnetic resonance breast images obtained in different
	geometries},
  journal = {J Biomed Opt},
  year = {2007},
  volume = {12},
  pages = {051902},
  number = {5},
  month = {Oct-Sept},
  doi = {10.1117/1.2798630},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/azarjbo2007.pdf}
}
@article{BednovUCY04,
  author = {Bednov, A. and Ulyanov, S. and Cheung, C. and Yodh, A. G.},
  title = {Correlation properties of multiple scattered light: implication to
	coherent diagnostics of burned skin},
  journal = {Journal of Biomedical Optics},
  year = {2004},
  volume = {9},
  pages = {347-352},
  doi = {10.1117/1.1646171},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/CecilCheung/burnedskinArjunJBO2004.pdf}
}
@article{BoasPRL,
  author = {Boas, D. A. and Campbell, L. E. and Yodh, A. G.},
  title = {Scattering and Imaging with Diffusing Temporal Field Correlations},
  journal = {Physical Review Letters},
  year = {1995},
  volume = {75},
  pages = {1855-1858},
  number = {9},
  doi = {10.1103/PhysRevLett.75.1855},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/boas1995-PRL.pdf}
}
@article{BoasPNAS1994,
  author = {Boas, D. A. and Oleary, M. A. and Chance, B. and Yodh, A. G.},
  title = {Scattering of Diffuse Photon Density Waves by Spherical Inhomogeneities
	within Turbid Media - Analytic Solution and Applications},
  journal = {Proc. Natl. Acad. Sci. USA},
  year = {1994},
  volume = {91},
  pages = {4887-4891},
  number = {11},
  doi = {10.1073/pnas.91.11.4887},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/boas1994procnatlacad91.pdf}
}
@article{BoasPRE1993,
  author = {Boas, D. A. and Oleary, M. A. and Chance, B. and Yodh, A. G.},
  title = {Scattering and Wavelength Transduction of Diffuse Photon Density
	Waves},
  journal = {Phys. Rev. E},
  year = {1993},
  volume = {47},
  pages = {R2999-R3002},
  number = {5},
  doi = {10.1103/PhysRevE.47.R2999},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/boas1993-phy-rev-e.pdf}
}
@article{boascorrelationjosa,
  author = {Boas, D. A. and Yodh, A. G.},
  title = {Spatially varying dynamical properties of turbid media probed with
	diffusing temporal light correlation},
  journal = {J. Opt. Soc. Am. {A}},
  year = {1997},
  volume = {14},
  pages = {192-215},
  number = {1},
  doi = {10.1364/JOSAA.14.000192},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/boas1997joptsocama14.pdf}
}
@article{BoasAO,
  author = {Boas, D.A. and O'Leary, M.A. and Chance, B. and Yodh, A.G.},
  title = {Detection and characterization of optical inhomogeneities with diffuse
	photon density waves: a signal-to-noise analysis},
  journal = {Applied Optics},
  year = {1997},
  volume = {36},
  pages = {75-92},
  doi = {10.1364/AO.36.000075},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/boas1997appopt36.pdf}
}
@article{Buckley09OptExp17,
  author = {Erin M. Buckley and Noah M. Cook and Turgut Durduran and Meeri N.
	Kim and Chao Zhou and Regine Choe and Guoqiang Yu and Susan Schultz
	and Chandra M. Sehgal and Daniel J. Licht and Peter H. Arger and
	Mary E. Putt and Hallam H. Hurt and Arjun G. Yodh},
  title = {Cerebral hemodynamics in preterm infants during positional intervention
	measured with diffuse correlation spectroscopy and transcranial Doppler
	ultrasound},
  journal = {Opt. Express},
  year = {2009},
  volume = {17},
  pages = {12571--12581},
  number = {15},
  doi = {10.1364/OE.17.012571},
  publisher = {OSA},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/buckley2009-optexp17-cerebral-hemodynamics-in-preterm-infants.pdf}
}
@article{busch:1840,
  author = {David R. Busch and Wensheng Guo and Regine Choe and Turgut Durduran
	and Michael D. Feldman and Carolyn Mies and Mark A. Rosen and Mitchell
	D. Schnall and Brian J. Czerniecki and Julia Tchou and Angela DeMichele
	and Mary E. Putt and Arjun G. Yodh},
  title = {Computer aided automatic detection of malignant lesions in diffuse
	optical mammography},
  journal = {Medical Physics},
  year = {2010},
  volume = {37},
  pages = {1840-1849},
  number = {4},
  month = {April},
  doi = {10.1118/1.3314075},
  keywords = {biological tissues; biomedical optical imaging; cancer; mammography;
	optical tomography},
  publisher = {AAPM},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/busch2010-computer-aided-automatic.pdf}
}
@article{b9pp00004f,
  author = {Theresa M. Busch and Xiaoman Xing and Guoqiang Yu and Arjun Yodh
	and E. Paul Wileyto and Hsing-Wen Wang and Turgut Durduran and Timothy
	C. Zhu and Ken Kang-Hsin Wang},
  title = {Fluence rate-dependent intratumor heterogeneity in physiologic and
	cytotoxic responses to Photofrin photodynamic therapy},
  journal = {Photochemical \& Photobiological Sciences},
  year = {2009},
  volume = {8},
  pages = {1683--1693},
  number = {12},
  month = {August},
  abstract = {Photodynamic therapy (PDT) can lead to the creation of heterogeneous,
	response-limiting hypoxia during illumination, which may be controlled
	in part through illumination fluence rate. In the present report
	we consider (1) regional differences in hypoxia, vascular response,
	and cell kill as a function of tumor depth and (2) the role of fluence
	rate as a mediator of depth-dependent regional intratumor heterogeneity.
	Intradermal RIF murine tumors were treated with Photofrin PDT using
	surface illumination at an irradiance of 75 or 38 mW cm-2. Regional
	heterogeneity in tumor response was examined through comparison of
	effects in the surface vs. base of tumors, i.e. along a plane parallel
	to the skin surface and perpendicular to the incident illumination.
	75 mW cm-2 PDT created significantly greater hypoxia in tumor bases
	relative to their surfaces. Increased hypoxia in the tumor base could
	not be attributed to regional differences in Photofrin concentration
	nor effects of fluence rate distribution on photochemical oxygen
	consumption, but significant depth-dependent heterogeneity in vascular
	responses and cytotoxic response were detected. At a lower fluence
	rate of 38 mW cm-2, no detectable regional differences in hypoxia
	or cytotoxic responses were apparent, and heterogeneity in vascular
	response was significantly less than that during 75 mW cm-2 PDT.
	This research suggests that the benefits of low-fluence-rate PDT
	are mediated in part by a reduction in intratumor heterogeneity in
	hypoxic, vascular and cytotoxic responses.},
  doi = {10.1039/b9pp00004f},
  timestamp = {2010.01.25},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2009/Photochem_Photobiol_Sci_v8_1683_2009.pdf}
}
@article{chaojbo2007,
  author = {Zhou C and Choe R and Shah, N and Durduran, T and Yu, Guoqiang and
	Durkin, A and Hsiang, D and Mehta, R and Butler, J and Cerussi, A
	and Tromberg, B J and Yodh, A G},
  title = {Diffuse optical monitoring of blood flow and oxygenation in human
	breast cancer during early stages of neoadjuvant chemotherapy},
  journal = {J Biomed Opt},
  year = {2007},
  volume = {12},
  pages = {051903},
  number = {5},
  month = {Oct-Sept},
  doi = {10.1364/OE.15.015507},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/zhoujbo2007.pdf}
}
@article{10.1371/journal.pone.0006539,
  author = {Cerniglia, George J. AND Pore, Nabendu AND Tsai, Jeff H. AND Schultz,
	Susan AND Mick, Rosemarie AND Choe, Regine AND Xing, Xiaoman AND
	Durduran, Turgut AND Yodh, Arjun G. AND Evans, Sydney M. AND Koch,
	Cameron J. AND Hahn, Stephen M. AND Quon, Harry AND Sehgal, Chandra
	M. AND Lee, William M. F. AND Maity, Amit},
  title = {Epidermal Growth Factor Receptor Inhibition Modulates the Microenvironment
	by Vascular Normalization to Improve Chemotherapy and Radiotherapy
	Efficacy},
  journal = {PLoS ONE},
  year = {2009},
  volume = {4},
  pages = {e6539},
  number = {8},
  month = {08},
  abstract = { Background 

Epidermal growth factor receptor (EGFR) inhibitors have shown only modest clinical activity when used as single agents to treat cancers. They decrease tumor cell expression of hypoxia-inducible factor 1-α (HIF-1α) and vascular endothelial growth factor (VEGF). Hypothesizing that this might normalize tumor vasculature, we examined the effects of the EGFR inhibitor erlotinib on tumor vascular function, tumor microenvironment (TME) and chemotherapy and radiotherapy sensitivity.

Methodology/Principal Findings

Erlotinib treatment of human tumor cells in vitro and mice bearing xenografts in vivo led to decreased HIF-1α and VEGF expression. Treatment altered xenograft vessel morphology assessed by confocal microscopy (following tomato lectin injection) and decreased vessel permeability (measured by Evan's blue extravasation), suggesting vascular normalization. Erlotinib increased tumor blood flow measured by Power Doppler ultrasound and decreased hypoxia measured by EF5 immunohistochemistry and tumor O2 saturation measured by optical spectroscopy. Predicting that these changes would improve drug delivery and increase response to chemotherapy and radiation, we performed tumor regrowth studies in nude mice with xenografts treated with erlotinib and either radiotherapy or the chemotherapeutic agent cisplatin. Erlotinib therapy followed by cisplatin led to synergistic inhibition of tumor growth compared with either treatment by itself (p<0.001). Treatment with erlotinib before cisplatin led to greater tumor growth inhibition than did treatment with cisplatin before erlotinib (p = 0.006). Erlotinib followed by radiation inhibited tumor regrowth to a greater degree than did radiation alone, although the interaction between erlotinib and radiation was not synergistic.

Conclusions/Significance

EGFR inhibitors have shown clinical benefit when used in combination with conventional cytotoxic therapy. Our studies show that targeting tumor cells with EGFR inhibitors may modulate the TME via vascular normalization to increase response to chemotherapy and radiotherapy. These studies suggest ways to assess the response of tumors to EGFR inhibition using non-invasive imaging of the TME.

}, doi = {10.1371/journal.pone.0006539}, publisher = {Public Library of Science}, url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/2009/GJCerniglia2009PLOS1v4.pdf} }
@article{CheungCTGY01,
  author = {Cheung, C. and Culver, J. P. and Takahashi, K. and Greenberg, J.
	H. and Yodh, A. G.},
  title = {In vivo cerebrovascular measurement combining diffuse near-infrared
	absorption and correlation spectroscopies},
  journal = {Physics In Medicine And Biology},
  year = {2001},
  volume = {46},
  pages = {2053-2065},
  doi = {10.1088/0031-9155/46/8/302},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/CecilCheung/cheung2001.pdf}
}
@article{CheungSBDPHY03,
  author = {Cheung, R. and Solonenko, M. and Busch, T. M. and Del Piero, F. and
	Putt, M. E. and Hahn, S. M. and Yodh, A. G.},
  title = {Correlation of in vivo photosensitizer fluorescence and photodynamic-therapy-induced
	depth of necrosis in a murine tumor model},
  journal = {Journal Of Biomedical Optics},
  year = {2003},
  volume = {8},
  pages = {248-252},
  doi = {10.1117/1.1560011},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/PDTrelated/RCheung2003JBOv8i2.pdf}
}
@article{ChoeCLDKGACFDCRY05,
  author = {Choe, R. and Corlu, A. and Lee, K. and Durduran, T. and Konecky,
	S. D. and Grosicka-Koptyra, M. and Arridge, S. R. and Czerniecki,
	B. J. and Fraker, D. L. and DeMichele, A. and Chance, B. and Rosen,
	M. A. and Yodh, A. G.},
  title = {Diffuse optical tomography of breast cancer during neoadjuvant chemotherapy:
	A case study with comparison to MRI},
  journal = {Med. Phys.},
  year = {2005},
  volume = {32},
  pages = {1128-1139},
  doi = {10.1118/1.1869612},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/RegineChoe/RChoeMP2005v32.pdf}
}
@article{ChoeDYNCYR03,
  author = {Choe, R. and Durduran, T. and Yu, G. Q. and Nijland, M. J. M. and
	Chance, B. and Yodh, A. G. and Ramanujam, N.},
  title = {Transabdominal near infrared oximetry of hypoxic stress in fetal
	sheep brain in utero},
  journal = {Proceedings Of The National Academy Of Sciences Of The United States
	Of America},
  year = {2003},
  volume = {100},
  pages = {12950-12954},
  doi = {10.1073/pnas.1735462100},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/RegineChoe/RChoe2003PNASv100i22.pdf}
}
@article{choe2009-jbiomedopt,
  author = {Regine Choe and Soren D. Konecky and Alper Corlu and Kijoon Lee and
	Turgut Durduran and David R. Busch and Saurav Pathak and Brian J.
	Czerniecki and Julia Tchou and Douglas L. Fraker and Angela DeMichele
	and Britton Chance and Simon R. Arridge and Martin Schweiger and
	Joseph P. Culver and Mitchell D. Schnall and Mary E. Putt and Mark
	A. Rosen and Arjun G. Yodh},
  title = {Differentiation of benign and malignant breast tumors by in-vivo
	three-dimensional parallel-plate diffuse optical tomography},
  journal = {Journal of Biomedical Optics},
  year = {2009},
  volume = {14},
  pages = {024020},
  number = {2},
  month = {April},
  eid = {024020},
  doi = {10.1117/1.3103325},
  numpages = {18},
  publisher = {SPIE},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/choe2009-jbiomedopt.pdf}
}
@incollection{RChoeBookchapterETBIMc18,
  author = {Choe, R and Yodh, A G},
  title = {Diffuse Optical Tomography of the Breast},
  booktitle = {Emerging Technologies in Breast Imaging and Mammography},
  publisher = {American Scientific Publishers},
  year = {2008},
  editor = {Suri, J and Rangayyan, R M and Laxminarayan, S},
  chapter = {18},
  pages = {317-342},
  address = {Stevenson Ranch, CA},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/BookChapterColorScanRC.pdf}
}
@article{sochung2011_jioh,
  author = {Chung, S. H. and Mehta, R. and Tromberg, B. J. and Yodh, A. G.},
  title = {Non-invasive measurement of deep tissue temperature changes caused
	by apoptosis during breast cancer neoadjuvant chemotherapy: A case
	study},
  journal = {Journal of Innovative Optical Health Sciences},
  year = {2011},
  volume = {4},
  pages = {361-372 },
  doi = {10.1142/S1793545811001708},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2011/sochung2011_JIOHS_04_4_pp361.pdf}
}
@article{CorluCDLSHAY05,
  author = {Corlu, A. and Choe, R. and Durduran, T. and Lee, K. and Schweiger,
	M. and Hillman, E. M. C. and Arridge, S. R. and Yodh, A. G.},
  title = {Diffuse optical tomography with spectral constraints and wavelength
	optimization},
  journal = {Applied Optics},
  year = {2005},
  volume = {44},
  pages = {2082-2093},
  doi = {10.1364/AO.44.002082},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/AlperCorlu/ACorlu2005AOv44i11.pdf}
}
@article{fluorescenceBreast,
  author = {Corlu, A and Choe, R and Durduran, T and Rosen, M A and Schweiger,
	M and Arridge, S R and Yodh, A G},
  title = {Three-dimensional \textit{in vivo} fluorescence diffuse optical tomography
	of breast cancer in humans},
  journal = {Opt. Express},
  year = {2007},
  volume = {15},
  pages = {6696-6716},
  number = {11},
  doi = {10.1364/OE.15.006696},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/AlperCorlu/corlufluorescencebreast2007.pdf}
}
@article{CorluDCSHAY03,
  author = {Corlu, A. and Durduran, T. and Choe, R. and Schweiger, M. and Hillman,
	E. M. C. and Arridge, S. R. and Yodh, A. G.},
  title = {Uniqueness and wavelength optimization in continuous-wave multispectral
	diffuse optical tomography},
  journal = {Optics Letters},
  year = {2003},
  volume = {28},
  pages = {2339-2341},
  doi = {10.1364/OL.28.002339},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/AlperCorlu/ACorlu2003OLv28i23.pdf}
}
@article{CulverCHZDSNCY03,
  author = {Culver, J. P. and Choe, R. and Holboke, M. J. and Zubkov, L. and
	Durduran, T. and Slemp, A. and Ntziachristos, V. and Chance, B. and
	Yodh, A. G.},
  title = {Three-dimensional diffuse optical tomography in the parallel plane
	transmission geometry: Evaluation of a hybrid frequency domain/continuous
	wave clinical system for breast imaging},
  journal = {Medical Physics},
  year = {2003},
  volume = {30},
  pages = {235-247},
  doi = {10.1118/1.1534109},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JoeCulver/CulverMedPhys2003.pdf}
}
@article{CulverDCFGY03,
  author = {Culver, J. P. and Durduran, T. and Cheung, C. and Furuya, D. and
	Greenberg, J. H. and Yodh, A. G.},
  title = {Diffuse optical measurement of hemoglobin and cerebral blood flow
	in rat brain during hypercapnia, hypoxia and cardiac arrest},
  journal = {Oxygen Transport To Tissue Volume Xxiii},
  year = {2003},
  volume = {510},
  pages = {293-297},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JoeCulver/JPCulver2001isott.pdf}
}
@article{CulverDFCGY03,
  author = {Culver, J. P. and Durduran, T. and Furuya, T. and Cheung, C. and
	Greenberg, J. H. and Yodh, A. G.},
  title = {Diffuse optical tomography of cerebral blood flow, oxygenation, and
	metabolism in rat during focal ischemia},
  journal = {Journal Of Cerebral Blood Flow And Metabolism},
  year = {2003},
  volume = {23},
  pages = {911-924},
  doi = {10.1097/01.WCB.0000076703.71231.BB},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JoeCulver/JPCulver2003JCBFM.pdf}
}
@article{CulverNHY01,
  author = {Culver, J. P. and Ntziachristos, V. and Holboke, M. J. and Yodh,
	A. G.},
  title = {Optimization of optode arrangements for diffuse optical tomography:
	A singular-value analysis},
  journal = {Optics Letters},
  year = {2001},
  volume = {26},
  pages = {701-703},
  doi = {10.1364/OL.26.000701},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JoeCulver/JPCulverOL2001v26i10.pdf}
}
@article{DanenWLTY98,
  author = {Danen, R. M. and Wang, Y. and Li, X. D. and Thayer, W. S. and Yodh,
	A. G.},
  title = {Regional imager for low-resolution functional imaging of the brain
	with diffusing near-infrared light},
  journal = {Photochemistry And Photobiology},
  year = {1998},
  volume = {67},
  pages = {33-40},
  doi = {10.1111/j.1751-1097.1998.tb05162.x},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/danen1998-photochem-photobio.pdf}
}
@article{Du:2006:Lasers-Surg-Med:16788929,
  author = {Du, K L and Mick, R and Busch, T M and Zhu, T C and Finlay, J C and
	Yu, G and Yodh, A G and Malkowicz, S B and Smith, D and Whittington,
	R and Stripp, D and Hahn, S M},
  title = {Preliminary results of interstitial motexafin lutetium-mediated PDT
	for prostate cancer},
  journal = {Lasers Surg Med},
  year = {2006},
  volume = {38},
  pages = {427-434},
  number = {5},
  month = {Jun},
  abstract = {BACKGROUND AND OBJECTIVES: Interstitial photodynamic therapy (PDT)
	is an emerging modality for the treatment of solid organ disease.
	Our group at the University of Pennsylvania has performed extensive
	studies that demonstrate the feasibility of interstitial PDT for
	prostate cancer. Our preclinical and clinical experience is herein
	detailed. STUDY DESIGN/MATERIALS AND METHODS: We have treated 16
	canines in preclinical studies, and 16 human subjects in a Phase
	I study, using motexafin lutetium-mediated PDT for recurrent prostate
	adenocarcinoma. Dosimetry of light fluence, drug level and oxygen
	distribution for these patients were performed. RESULTS: We demonstrate
	the safe and comprehensive treatment of the prostate using PDT. However,
	there is significant variability in the dose distribution and the
	subsequent tissue necrosis throughout the prostate. CONCLUSIONS:
	PDT is an attractive option for the treatment of prostate adenocarcinoma.
	However, the observed variation in PDT dose distribution translates
	into uncertain therapeutic reproducibility. Our future focus will
	be on the development of an integrated system that is able to both
	detect and compensate for dose variations in real-time, in order
	to deliver a consistent overall PDT dose distribution.},
  doi = {10.1002/lsm.20341},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/GuoqingYu/Du:2006:Lasers-Surg-Med:16788929.pdf}
}
@article{DurduranThesisAbstMedPhys04,
  author = {Durduran, T.},
  title = {Noninvasive measurements of tissue hemodynamics with hybrid diffuse
	optical methods},
  journal = { Medical Physics},
  year = {2004},
  volume = {31},
  pages = {2178},
  doi = {10.1118/1.1763412},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/TurgutDurduran/turgutThesisAbstract.pdf}
}
@article{DurduranBYZFYDG04,
  author = {Durduran, T. and Burnett, M. G. and Yu, G. and Zhou, C. and Furuya,
	D. and Yodh, A. G. and Detre, J. A. and Greenberg, J. H.},
  title = {Spatiotemporal Quantification of Cerebral Blood Flow During Functional
	Activation in Rat Somatosensory Cortex Using Laser-Speckle Flowmetry},
  journal = {Journal of Cerebral Blood Flow \& Metabolism},
  year = {2004},
  volume = {24},
  pages = {518-525},
  doi = {10.1097/00004647-200405000-00005},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/TurgutDurduran/jcbfm2004durduranspeckle.pdf}
}
@article{durduran2010-rpp73-dotmt,
  author = {T Durduran and R Choe and W B Baker and A G Yodh},
  title = {Diffuse optics for tissue monitoring and tomography},
  journal = {Reports on Progress in Physics},
  year = {2010},
  volume = {73},
  pages = {076701},
  number = {7},
  month = {June},
  abstract = {This review describes the diffusion model for light transport in tissues
	and the medical applications of diffuse light. Diffuse optics is
	particularly useful for measurement of tissue hemodynamics, wherein
	quantitative assessment of oxy- and deoxy-hemoglobin concentrations
	and blood flow are desired. The theoretical basis for near-infrared
	or diffuse optical spectroscopy is developed, and the basic elements
	of diffuse optical tomography are outlined. We also discuss diffuse
	correlation spectroscopy, a technique whereby temporal correlation
	functions of diffusing light are transported through tissue and are
	used to measure blood flow. Essential instrumentation is described,
	and representative brain and breast functional imaging and monitoring
	results illustrate the workings of these new tissue diagnostics.},
  doi = {10.1088/0034-4885/73/7/076701},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/durduran2010-rpp73-dotmt.pdf}
}
@article{DurduranCCZHGCY02,
  author = {Durduran, T. and Choe, R. and Culver, J. P. and Zubkov, L. and Holboke,
	M. J. and Giammarco, J. and Chance, B. and Yodh, A. G.},
  title = {Bulk optical properties of healthy female breast tissue},
  journal = {Physics In Medicine And Biology},
  year = {2002},
  volume = {47},
  pages = {2847-2861},
  doi = {10.1088/0031-9155/47/16/302},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/TurgutDurduran/TDurduran2002PMB47.pdf}
}
@article{DurduranYZWPSSGYB05,
  author = {Durduran, T. and Choe, R. and Yu, G. Q. and Zhou, C. and Tchou, J.
	C. and Czerniecki, B. J. and Yodh, A. G.},
  title = {Diffuse optical measurement of blood flow in breast tumors},
  journal = {Optics Letters},
  year = {2005},
  volume = {30},
  pages = {2915-2917},
  doi = {10.1364/OL.30.002915},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/TurgutDurduran/TurgutBreastFlowOL05.pdf}
}
@article{DurduranCHLZCPY99,
  author = {Durduran, T. and Culver, J. P. and Holboke, M. J. and Li, X. D. and
	Zubkov, L. and Chance, B. and Pattanayak, D. N. and Yodh, A. G.},
  title = {Algorithms for 3D localization and imaging using near-field diffraction
	tomography with diffuse light},
  journal = {Optics Express},
  year = {1999},
  volume = {4},
  pages = {247-262},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/TurgutDurduran/TDurduran1999OEv4i8.pdf}
}
@article{DurduranYCB97,
  author = {Durduran, T. and Yodh, A. G. and Chance, B. and Boas, D. A.},
  title = {Does the photon-diffusion coefficient depend on absorption?},
  journal = {Journal Of The Optical Society Of America A-Optics Image Science
	And Vision},
  year = {1997},
  volume = {14},
  pages = {3358-3365},
  doi = {10.1364/JOSAA.14.003358},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/TurgutDurduran/TDurduran1997JOSAv14i12.pdf}
}
@article{DurduranYBDGWZY04,
  author = {Durduran, T. and Yu, G. and Burnett, M. G. and Detre, J. A. and Greenberg,
	J. H. and Wang, J. and Zhou, C. and Yodh, A. G.},
  title = {Diffuse optical measurement of blood flow, blood oxygenation, and
	metabolism in a human brain during sensorimotor cortex activation},
  journal = {Optics Letters},
  year = {2004},
  volume = {29},
  pages = {1766-1768},
  doi = {10.1364/OL.29.001766},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/TurgutDurduran/turgutHumanOL2004.pdf}
}
@article{durduran:037004,
  author = {Turgut Durduran and Chao Zhou and Erin M. Buckley and Meeri N. Kim
	and Guoqiang Yu and Regine Choe and J. William Gaynor and Thomas
	L. Spray and Suzanne M. Durning and Stefanie E. Mason and Lisa M.
	Montenegro and Susan C. Nicolson and Robert A. Zimmerman and Mary
	E. Putt and Jiongjiong Wang and Joel H. Greenberg and John A. Detre
	and Arjun G. Yodh and Daniel J. Licht},
  title = {Optical measurement of cerebral hemodynamics and oxygen metabolism
	in neonates with congenital heart defects},
  journal = {Journal of Biomedical Optics},
  year = {2010},
  volume = {15},
  pages = {037004},
  number = {3},
  month = {May},
  eid = {037004},
  doi = {10.1117/1.3425884},
  keywords = {biomedical MRI; biomedical optical imaging; haemodynamics; haemorheology;
	infrared spectroscopy; molecular biophysics; neurophysiology; proteins},
  numpages = {10},
  publisher = {SPIE},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/durduran2010-jbo15-3.pdf}
}
@article{durduran2009-optexp17,
  author = {Turgut Durduran and Chao Zhou and Brian L. Edlow and Guoqiang Yu
	and Regine Choe and Meeri N. Kim and Brett L. Cucchiara and Mary
	E. Putt and Qaisar Shah and Scott E. Kasner and Joel H. Greenberg
	and Arjun G. Yodh and John A. Detre},
  title = {Transcranial optical monitoring of cerebrovascular hemodynamics in
	acute stroke patients},
  journal = {Opt. Express},
  year = {2009},
  volume = {17},
  pages = {3884--3902},
  number = {5},
  doi = {10.1364/OE.17.003884},
  publisher = {OSA},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/durduran2009-optexp17.pdf}
}
@article{citeulike:7134761,
  author = {Edlow, Brian L. and Kim, Meeri N. and Durduran, Turgut and Zhou,
	Chao and Putt, Mary E. and Yodh, Arjun G. and Greenberg, Joel H.
	and Detre, John A.},
  title = {The effects of healthy aging on cerebral hemodynamic responses to
	posture change},
  journal = {Physiological Measurement},
  year = {2010},
  volume = {31},
  pages = {477-495},
  number = {4},
  month = {April},
  abstract = {Aging is associated with an increased incidence of orthostatic hypotension,
	impairment of the baroreceptor reflex and lower baseline cerebral
	blood flow. The effect of aging on cerebrovascular autoregulation,
	however, remains to be fully elucidated. We used a novel optical
	instrument to assess microvascular cerebral hemodynamics in the frontal
	lobe cortex of 60 healthy subjects ranging from ages 20–78. Diffuse
	correlation spectroscopy (DCS) and near-infrared spectroscopy (NIRS)
	were used to measure relative cerebral blood flow (rCBF), total hemoglobin
	concentration (THC), oxyhemoglobin concentration (HbO 2 ) and deoxyhemoglobin
	concentration (Hb). Cerebral hemodynamics were monitored for 5 min
	at each of the following postures: head-of-bed 30°, supine, standing
	and supine. Supine-to-standing posture change caused significant
	declines in rCBF, THC and HbO 2 , and an increase in Hb, across the
	age continuum ( p < 0.01). Healthy aging did not alter postural changes
	in frontal cortical rCBF ( p = 0.23) and was associated with a smaller
	magnitude of decline in HbO 2 ( p < 0.05) during supine-to-standing
	posture change. We conclude that healthy aging does not alter postural
	changes in frontal cortical perfusion.},
  day = {01},
  doi = {10.1088/0967-3334/31/4/002},
  issn = {0967-3334},
  keywords = {aging, dcs, healthy, healthy\_aging, hob, nirs},
  posted-at = {2010-05-07 17:07:03},
  priority = {0},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/edlow2010-effects-of-healthy-aging.pdf}
}
@article{fisher2008tpe,
  author = {Fisher, J A N and Barchi, J R and Welle, C G and Kim, G H and Kosterin,
	P and Obaid, A L and Yodh, A G and Contreras, D and Salzberg, B M},
  title = {Two-photon excitation of potentiometric probes enables optical recording
	of action potentials from mammalian nerve terminals in situ},
  journal = {Journal of Neurophysiology},
  year = {2008},
  pages = {00929--2007},
  doi = {10.1152/jn.00929.2007},
  publisher = {Am Physiological Soc},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/fisher2photon.pdf}
}
@article{FisherCCY04,
  author = {Fisher, J. A. N. and Civillico, E. F. and Contreras, D. and Yodh,
	A. G.},
  title = {In vivo fluorescence microscopy of neuronal activity in three dimensions
	by use of voltage-sensitive dyes},
  journal = {Optics Letters},
  year = {2004},
  volume = {29},
  pages = {71-73},
  doi = {10.1364/OL.29.000071},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JonathanFisher/JFisher2004OLv29i1.pdf}
}
@article{FisherMYR06,
  author = {Fisher, J. A. N. and Marchenko, V. A. and Yodh, A. G. and Rogers,
	R. F.},
  title = {Spatiotemporal Activity Patterns During Respiratory Rhythmogenesis
	in the Rat Ventrolateral Medulla},
  journal = {J Neurophysiol},
  year = {2006},
  volume = {95},
  pages = {1982-1991},
  doi = {10.1152/jn.00674.2005},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JonathanFisher/Fisher_etal_JNeurophys_2005.pdf}
}
@article{FisherSY05,
  author = {Fisher, J. A. N. and Salzberg, B. M. and Yodh, A. G.},
  title = {Near infrared two-photon excitation cross-sections of voltage-sensitive
	dyes},
  journal = {J Neurosci Methods},
  year = {2005},
  volume = {148},
  pages = {94-102},
  doi = {10.1016/j.jneumeth.2005.06.027},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JonathanFisher/Fisher_etal_JNeurosciMeth_2005.pdf}
}
@article{fisher2009-jcp,
  author = {Jonathan A. N. Fisher and Kimihiro Susumu and Michael J. Therien
	and Arjun G. Yodh},
  title = {One- and two-photon absorption of highly conjugated multiporphyrin
	systems in the two-photon Soret transition region},
  journal = {The Journal of Chemical Physics},
  year = {2009},
  volume = {130},
  pages = {134506},
  number = {13},
  month = {April},
  doi = {10.1063/1.3089795},
  numpages = {8},
  publisher = {AIP},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JonathanFisher/fisher_etal_JCP2009.pdf}
}
@article{Goff201046,
  author = {Donna A. Goff and Erin M. Buckley and Turgut Durduran and Jiongjong
	Wang and Daniel J. Licht},
  title = {Noninvasive Cerebral Perfusion Imaging in High-Risk Neonates},
  journal = {Seminars in Perinatology},
  year = {2010},
  volume = {34},
  pages = {46 - 56},
  number = {1},
  month = {February},
  note = {Imaging the Developing Brain},
  doi = {DOI:10.1053/j.semperi.2009.10.005},
  issn = {0146-0005},
  keywords = {infant cerebral blood flow},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/goff2010-noninvasive-cerebral.pdf}
}
@article{HolbokeTLSFKBCY00,
  author = {Holboke, M. J. and Tromberg, B. J. and Li, X. and Shah, N. and Fishkin,
	J. and Kidney, D. and Butler, J. and Chance, B. and Yodh, A. G.},
  title = {Three-dimensional diffuse optical mammography with ultrasound localization
	in a human subject},
  journal = {Journal Of Biomedical Optics},
  year = {2000},
  volume = {5},
  pages = {237-247},
  doi = {10.1117/1.429992},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/MonicaHolboke/holbokeJBO2000.pdf}
}
@article{IntesRCNYC03,
  author = {Intes, X. and Ripoll, J. and Chen, Y. and Nioka, S. and Yodh, A.
	G. and Chance, B.},
  title = {In vivo continuous-wave optical breast imaging enhanced with Indocyanine
	Green},
  journal = {Medical Physics},
  year = {2003},
  volume = {30},
  pages = {1039-1047},
  doi = {10.1118/1.1573791},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/XavierIntes/XIntes2003MPv30.pdf}
}
@article{citeulike:6170953,
  author = {Kim, Meeri and Durduran, Turgut and Frangos, Suzanne and Edlow, Brian
	and Buckley, Erin and Moss, Heather and Zhou, Chao and Yu, Guoqiang
	and Choe, Regine and Maloney-Wilensky, Eileen and Wolf, Ronald and
	Grady, M. and Greenberg, Joel and Levine, Joshua and Yodh, Arjun
	and Detre, John and Kofke, W.},
  title = {Noninvasive Measurement of Cerebral Blood Flow and Blood Oxygenation
	Using Near-Infrared and Diffuse Correlation Spectroscopies in Critically
	Brain-Injured Adults},
  journal = {Neurocritical Care},
  year = {2010},
  volume = {12},
  pages = {173-180},
  number = {2},
  month = {April},
  abstract = {Abstract Background\ \ This study assesses the utility of
	a hybrid optical instrument for noninvasive transcranial monitoring
	in the neurointensive care unit. The instrument is based on diffuse
	correlation spectroscopy (DCS) for measurement of cerebral blood
	flow (CBF), and near-infrared spectroscopy (NIRS) for measurement
	of oxy- and deoxy-hemoglobin concentration. DCS/NIRS measurements
	of CBF and oxygenation from frontal lobes are compared with concurrent
	xenon-enhanced computed tomography (XeCT) in patients during induced
	blood pressure changes and carbon dioxide arterial partial pressure
	variation. Methods\ \ Seven neurocritical care patients
	were included in the study. Relative CBF measured by DCS (rCBFDCS),
	and changes in oxy-hemoglobin (ΔHbO2), deoxy-hemoglobin (ΔHb), and
	total hemoglobin concentration (ΔTHC), measured by NIRS, were continuously
	monitored throughout XeCT during a baseline scan and a scan after
	intervention. CBF from XeCT regions-of-interest (ROIs) under the
	optical probes were used to calculate relative XeCT CBF (rCBFXeCT)
	and were then compared to rCBFDCS. Spearman's rank coefficients were
	employed to test for associations between rCBFDCS and rCBFXeCT, as
	well as between rCBF from both modalities and NIRS parameters. Results\ \ rCBFDCS
	and rCBFXeCT showed good correlation (r s\ =\ 0.73, P\ =\ 0.010)
	across the patient cohort. Moderate correlations between rCBFDCS
	and ΔHbO2/ΔTHC were also observed. Both NIRS and DCS distinguished
	the effects of xenon inhalation on CBF, which varied among the patients.
	Conclusions\ \ DCS measurements of CBF and NIRS measurements
	of tissue blood oxygenation were successfully obtained in neurocritical
	care patients. The potential for DCS to provide continuous, noninvasive
	bedside monitoring for the purpose of CBF management and individualized
	care is demonstrated.},
  doi = {10.1007/s12028-009-9305-x},
  keywords = {dcs, neurotrauma, nirs, validation, xenon},
  priority = {0},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/kim2010-noninvasive-measurement.pdf}
}
@article{KoneckyOE2008,
  author = {Konecky, S D and Panasyuk, G Y and Lee, K and Markel, V A and Yodh,
	A G and Schotland, J C},
  title = {Imaging complex structures with diffuse light},
  journal = {Opt. Express},
  year = {2008},
  volume = {16},
  pages = {5048-5060},
  number = {7},
  doi = {10.1364/OE.16.005048},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/KoneckyOE2008.pdf}
}
@article{sdkonecky2008MPv35,
  author = {{Konecky}, S.~D. and {Choe}, R. and {Corlu}, A. and {Lee}, K. and
	{Wiener}, R. and {Srinivas}, S.~M. and {Saffer}, J.~R. and {Freifelder},
	R. and {Karp}, J.~S. and {Hajjioui}, N. and {Azar}, F. and {Yodh},
	A.~G. },
  title = {Comparison of diffuse optical tomography of human breast with whole-body
	and breast-only positron emission tomography},
  journal = {Medical Physics},
  year = {2008},
  volume = {35},
  pages = {446-455},
  number = {2},
  month = {Feb},
  doi = {10.1118/1.2826560},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/SDKonecky2008MPv35.pdf}
}
@article{xingdeAO1996,
  author = {Li, X.D. and O'Leary, M.A. and Boas, D.A. and Chance, B. and Yodh,
	A.G.},
  title = {Fluorescent diffuse photon density waves in homogenous and heterogeneous
	turbid media: analytic solutions and applications},
  journal = {Applied Optics},
  year = {1996},
  volume = {35},
  pages = {3746-3758},
  doi = {10.1364/AO.35.003746},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/li1996-appl-optics.pdf}
}
@article{LiCY98,
  author = {Li, X. D. and Chance, B. and Yodh, A. G.},
  title = {Fluorescent heterogeneities in turbid media: limits for detection,
	characterization, and comparison with absorption},
  journal = {Applied Optics},
  year = {1998},
  volume = {37},
  pages = {6833-6844},
  doi = {10.1364/AO.37.006833},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/li1998-appl-optics.pdf}
}
@article{xingdefft1,
  author = {Li, X. D. and Durduran, T. and Chance, B and Yodh, A. G. and Pattanayak,
	D. N.},
  title = {Diffraction tomography for biochemical imaging with diffuse-photon
	density waves},
  journal = {Optics Letters},
  year = {1997},
  volume = {22},
  pages = {573-575},
  number = {8},
  doi = {10.1364/OL.22.000573},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/XingdeLi/Xli1997OLv22i8.pdf}
}
@article{xingdefft1errata,
  author = {Li, X. D. and Durduran, T. and Chance, B and Yodh, A. G. and Pattanayak,
	D. N.},
  title = {Diffraction tomography for biochemical imaging with diffuse-photon
	density waves: errata},
  journal = {Optics Letters},
  year = {1997},
  volume = {22},
  pages = {1198},
  number = {15},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/XingdeLi/Xli1997OLv22i8errata.pdf}
}
@article{xingdefft2,
  author = {Li, X. D. and Pattanayak, D. N. and Durduran, T. and Culver, J. P.
	and Chance, B. and Yodh, A. G.},
  title = {Near-field diffraction tomography with diffuse photon density waves},
  journal = {Physical Review E},
  year = {2000},
  volume = {61},
  pages = {4295-4309},
  number = {4},
  doi = {10.1103/PhysRevE.61.4295},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/li2000-phy-rev-e.pdf}
}
@article{sunargangzheng2007,
  author = {Liping, S and Li, H and Sunar, U and Chen, J and Corbin, I and Yodh,
	A G and Zheng, G},
  title = {Naphthalocyanine-reconstituted LDL nanoparticles for in vivo cancer
	imaging and treatment},
  journal = {Int J of Nanomed},
  year = {2007},
  volume = {2},
  pages = {767},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/sunarIJN_2417_Song.pdf}
}
@article{Luckl2010_FrontNeuroEg,
  author = {Janos Luckl and Wesley Baker and Zheng-hui Sun and Turgut Durduran
	and Arjun G Yodh and Joel H Greenberg},
  title = {The biological effect of contralateral forepaw stimulation in rat
	focal cerebral ischemia: a multispectral optical imaging study},
  journal = {Frontiers in Neuroenergetics},
  year = {2010},
  volume = {2},
  pages = {12},
  number = {0},
  abstract = {Our group has already published the possible neuroprotective effect
	of contralateral forepaw stimulation in temporary focal ischemia
	in a study. However, the background is still unclear. In the present
	study we investigated the possible mechanism by monitoring focal
	ischemia with multispectral (laser speckle, imaging of intrinsic
	signals (OIS)) imaging. Sprague-Dawley rats were prepared using 1.2%
	isoflurane anesthesia. The middle cerebral artery was occluded by
	photothrombosis (4mW) and the common carotid artery was ligated permanently.
	Physiological variables were constantly monitored during the experiment.
	A 6x6 mm area centered 3 mm posterior and 4 mm lateral to Bregma
	was thinned for laser speckle and OIS imaging. Nine circular regions-of-interests
	(0.3 mm in diameter) were evenly spaced on the speckle contrast image
	for the analysis of peri-infarct flow transients, blood flow and
	metabolic changes. Both the sham (n=7) and forepaw stimulated animals
	(n=7) underwent neurological examinations 24 h after ischemia at
	which point all animals were sacrificed and the infarct size was
	determined by triphenyltetrazolium chloride. The physiological variables
	were in normal range and the experimental protocol did not cause
	significant differences between groups. Both the neurological scores
	(sham:3.6±1.7, stimulated:4.3±1.4,) and the infarct
	volume (sham:124±39 mm3, stimulated: 147±47 mm3,) did
	not show significant differences between groups. The forepaw stimulation
	did not increase the intraischemic flow neither over the penumbral
	or the peri-ischemic area. However, the hemoglobin transients related
	metabolic load (CMRO2) was significantly lower (p<0.001) while
	the averaged number of hyperemic flow transients were significantly
	(p=0.013) higher in the forepaw (sham:3.5±2.2, stimulated:
	7.0±2.3,) stimulated animals.},
  doi = {10.3389/fnene.2010.00019},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/Luckl_Frontiers_in_Neuroenergetics_2010.pdf}
}
@article{luckl2008cpf,
  author = {Luckl, J. and Zhou, C. and Durduran, T. and Yodh, A.G. and Greenberg,
	J.H.},
  title = {Characterization of periinfarct flow transients with laser speckle
	and Doppler after middle cerebral artery occlusion in the rat},
  journal = {Journal of Neuroscience Research},
  year = {2009},
  volume = {87},
  pages = {1219-1229},
  number = {5},
  month = {April},
  doi = {10.1002/jnr.21933},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/luckl2009-jnr-87-5.pdf}
}
@article{kalatumortnf,
  author = {Menon, C and Polin, G. M. and Prabakaran, I. and Hs, A. and Cheung,
	C and Culver, J. P. and Pingpank, J. F. and Sehgal, C. S. and Yodh,
	A. G. and Buerk, D. G. and Fraker, D. L.},
  title = {An Integrated Approach to Measuring Tumor Oxygen Status using Human
	Melanoma Xenografts as a Model},
  journal = {Cancer Research},
  year = {2003},
  volume = {63},
  pages = {7232-7240},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/PDTrelated/CMenon2003CRv63.pdf}
}
@article{Mesquita2010HemodynamicAndMetabolic,
  author = {Rickson C. Mesquita and Nicolas Skuli and Meeri N. Kim and Jiaming
	Liang and Steve Schenkel and Amar J. Majmundar and M. Celeste Simon
	and Arjun G. Yodh},
  title = {Hemodynamic and metabolic diffuse optical monitoring in a mouse model
	of hindlimb ischemia},
  journal = {Biomed. Opt. Express},
  year = {2010},
  volume = {1},
  pages = {1173--1187},
  number = {4},
  month = {Nov},
  abstract = {Murine hindlimb ischemia is a useful model for investigation of the
	mechanisms of peripheral arterial disease and for understanding the
	role of endothelial cells and generic factors affecting vascular
	regeneration or angiogenesis. To date, important research with these
	models has explored tissue reperfusion following ischemia with Laser
	Doppler methods, methods which provide information about superficial
	(~mm) vascular regeneration. In this work, we employ diffuse correlation
	spectroscopy (DCS) and diffuse optical spectroscopy (DOS) in mice
	after hindlimb ischemia. We hypothesize that vascular re-growth is
	not uniform in tissue, and therefore, since diffuse optical methods
	are capable of probing deep tissues, that the diffuse optics approach
	will provide a more complete picture of the angiogenesis process
	throughout the whole depth profile of the limb. Besides increased
	depth penetration, the combined measurements of DCS and DOS enable
	all-optical, noninvasive, longitudinal monitoring of tissue perfusion
	and oxygenation that reveals the interplay between these hemodynamic
	parameters during angiogenesis. Control mice were found to reestablish
	90\% of perfusion and oxygen consumption during this period, but
	oxygen saturation in the limb only partially recovered to about 30\%
	of its initial value. The vascular recovery of mice with endothelial
	cell-specific deletion of HIF-2$\alpha$ was found to be significantly
	impaired relative to control mice, indicating that HIF-2$\alpha$
	is important for endothelial cell functions in angiogenesis. Comparison
	of DOS/DCS measurements to parallel measurements in the murine models
	using Laser Doppler Flowmetry reveal differences in the reperfusion
	achieved by superficial versus deep tissue during neoangiogenesis;
	findings from histological analysis of blood vessel development were
	further correlated with these differences. In general, the combination
	of DCS and DOS enables experimenters to obtain useful information
	about oxygenation, metabolism, and perfusion throughout the limb.
	The results establish diffuse optics as a practical noninvasive method
	to evaluate the role of transcription factors, such as the endothelial
	cell-specific HIF-2$\alpha$, in genetic ally modified mice.},
  doi = {10.1364/BOE.1.001173},
  keywords = {Biology; Light propagation in tissues; Medical and biological imaging;
	Physiology},
  publisher = {OSA},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/mesquita2010-hemodynamic-and-metabolic.pdf}
}
@inproceedings{mesquita2011_procfermi,
  author = {Mesquita, R. C. and Yodh, A. G.},
  title = {Diffuse optics: Fundamentals and tissue applications},
  booktitle = {Proceedings of the International School of Physics "Enrico Fermi"
	Course CLXXIII "Nano Optics and Atomics: Transport of Light and Matter
	Waves},
  year = {2011},
  editor = {Kaiser, R. and Weirsma, D. S. and Fallini, L.},
  volume = {173},
  pages = {51-74},
  doi = {10.3254/978-1-60750-755-0-51},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2011/Nano_Optics_and_Atomics_2011.pdf}
}
@article{NtziachristosCY99,
  author = {Ntziachristos, V. and Chance, B. and Yodh, A. G.},
  title = {Differential diffuse optical tomography},
  journal = {Optics Express},
  year = {1999},
  volume = {5},
  pages = {230-242},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/VasilisNtziachristos/VNtziachristos1999OEv5.pdf}
}
@article{NtziachristosHYC01,
  author = {Ntziachristos, V. and Hielscher, A. H. and Yodh, A. G. and Chance,
	B.},
  title = {Diffuse optical tomography of highly heterogeneous media},
  journal = {Ieee Transactions On Medical Imaging},
  year = {2001},
  volume = {20},
  pages = {470-478},
  doi = {10.1109/42.929613},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/VasilisNtziachristos/VNtziachristos2001IEEEMIv20i6.pdf}
}
@article{NtziachristosMYC99,
  author = {Ntziachristos, V. and Ma, X. H. and Yodh, A. G. and Chance, B.},
  title = {Multichannel photon counting instrument for spatially resolved near
	infrared spectroscopy},
  journal = {Review Of Scientific Instruments},
  year = {1999},
  volume = {70},
  pages = {193-201},
  doi = {10.1063/1.1149565},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/NtziachristosMYC99.pdf}
}
@article{NtziachristosYSC00,
  author = {Ntziachristos, V. and Yodh, A. G. and Schnall, M. and Chance, B.},
  title = {Concurrent MRI and diffuse optical tomography of breast after indocyanine
	green enhancement},
  journal = {Proceedings Of The National Academy Of Sciences Of The United States
	Of America},
  year = {2000},
  volume = {97},
  pages = {2767-2772},
  doi = {10.1073/pnas.040570597},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/VasilisNtziachristos/VNtziachristos2000PNASv97i6.pdf}
}
@article{NtziachristosYSC02,
  author = {Ntziachristos, V. and Yodh, A. G. and Schnall, M. D. and Chance,
	B.},
  title = {MRI-guided diffuse optical spectroscopy of malignant and benign breast
	lesions},
  journal = {Neoplasia},
  year = {2002},
  volume = {4},
  pages = {347-354},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/VasilisNtziachristos/VNtziachristos2002Neov4.pdf}
}
@article{OlearyBCY95,
  author = {Oleary, M. A. and Boas, D. A. and Chance, B. and Yodh, A. G.},
  title = {Experimental images of heterogeneous turbid media by frequency-domain
	diffusing-photon tomography},
  journal = {Optics Letters},
  year = {1995},
  volume = {20},
  pages = {426-428},
  doi = {10.1364/OL.20.000426},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/oleary1995optlett20.pdf}
}
@article{OlearyBCY94,
  author = {Oleary, M. A. and Boas, D. A. and Chance, B. and Yodh, A. G.},
  title = {Reradiation and imaging of diffuse photon density waves using fluorescent
	inhomogeneities},
  journal = {Journal Of Luminescence},
  year = {1994},
  volume = {60-61},
  pages = {281-286},
  doi = {10.1016/0022-2313(94)90147-3},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/OlearyBCY94.pdf}
}
@article{OlearyBCY92,
  author = {Oleary, M. A. and Boas, D. A. and Chance, B. and Yodh, A. G.},
  title = {Refraction of diffuse photon density waves},
  journal = {Physical Review Letters},
  year = {1992},
  volume = {69},
  pages = {2658-2661},
  doi = {10.1103/PhysRevLett.69.2658},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/oleary1992prl69.pdf}
}
@article{OLearyOL96,
  author = {OLeary, M. A. and Boas, D. A. and Li, X. D. and Chance, B. and Yodh,
	A. G.},
  title = {Fluorescence lifetime imaging in turbid media},
  journal = {Optics Letters},
  year = {1996},
  volume = {21},
  pages = {158-160},
  doi = {10.1364/OL.21.000158},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/oleary1996optlett21.pdf}
}
@article{PattanayakY99,
  author = {Pattanayak, D. N. and Yodh, A. G.},
  title = {Diffuse optical 3D slice imaging of bounded turbid media using a
	new integro-differential equation},
  journal = {Optics Express},
  year = {1999},
  volume = {4},
  pages = {231-240},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/pattanayak1999-optics-express.pdf}
}
@article{RPeriniCMR08review,
  author = {Perini, R and Choe, R and Yodh, A G and Sehgal, C and Divgi, C and
	Rosen, M A},
  title = {Non-invasive Assessment of Tumor Neovasculature: Techniques and Clinical
	Applications},
  journal = {Cancer and Metastasis Reviews},
  year = {2008},
  volume = {27},
  pages = {615-630},
  doi = {10.1007/s10555-008-9147-6},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/RPerini2008CMRv27.pdf}
}
@article{RipollNCPYN01,
  author = {Ripoll, J. and Ntziachristos, V. and Culver, J. P. and Pattanayak,
	D. N. and Yodh, A. G. and Nieto-Vesperinas, M.},
  title = {Recovery of optical parameters in multiple-layered diffusive media:
	theory and experiments},
  journal = {Journal Of The Optical Society Of America A-Optics Image Science
	And Vision},
  year = {2001},
  volume = {18},
  pages = {821-830},
  doi = {10.1364/JOSAA.18.000821},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/JorgeRipoll/JRipoll2001JOSAv18i4.pdf}
}
@article{Ross:2006:J-Surg-Res:16650871,
  author = {Ross, H M and Smelstoys, J A and Davis, G J and Kapatkin, A S and
	Del Piero, F and Reineke, E and Wang, H and Zhu, T C and Busch, T
	M and Yodh, A G and Hahn, S M},
  title = {Photodynamic therapy with motexafin lutetium for rectal cancer: a
	preclinical model in the dog},
  journal = {J Surg Res},
  year = {2006},
  volume = {135},
  pages = {323-330},
  number = {2},
  month = {Oct},
  abstract = {PURPOSE: Local recurrence of rectal cancer remains a significant clinical
	problem despite multi-modality therapy. Photodynamic Therapy (PDT)
	is a cancer treatment which generates tumor kill through the production
	of singlet oxygen in cells containing a photosensitizing drug when
	exposed to laser light of a specific wavelength. PDT is a promising
	modality for prevention of local recurrence of rectal cancer for
	several reasons: tumor cells may selectively retain photosensitizer
	at higher levels than normal tissues, the pelvis after mesorectal
	excision is a fixed space amenable to intra-operative illumination,
	and PDT can generate toxicity in tissues up to 1 cm thick. This study
	evaluated the safety, tissue penetration of 730 nm light, normal
	tissue toxicity and surgical outcome in a dog model of rectal resection
	after motexafin lutetium-mediated photodynamic therapy. METHODS:
	Ten mixed breed dogs were used. Eight dogs underwent proctectomy
	and low rectal end to end stapled anastomosis. Six dogs received
	the photosensitizing agent motexafin lutetium (MLu, Pharmacyclics,
	Inc., Sunnyvale, CA) of 2 mg/kg preoperatively and underwent subsequent
	pelvic illumination of the transected distal rectum of 730 nm light
	with light doses ranging from 0.5 J/cm(2) to 10 J/cm(2) three hours
	after drug delivery. Two dogs received light, but no drug, and underwent
	proctectomy and low-rectal stapled anastomosis. Two dogs underwent
	midline laparotomy and pelvic illumination. Light penetration in
	tissues was determined for small bowel, rectum, pelvic sidewall,
	and skin. Clinical outcomes were recorded. Animals were sacrificed
	at 14 days and histological evaluation was performed. RESULTS: All
	dogs recovered uneventfully. No dog suffered an anastomotic leak.
	Severe tissue toxicity was not seen. Histological findings at necropsy
	revealed mild enteritis in all dogs. The excitation light penetration
	depths were 0.46 +/- 0.18, 0.46 +/- 0.15, and 0.69 +/- 0.39 cm, respectively,
	for rectum, small bowel, and peritoneum in dogs that had received
	MLu. For control dogs without photosensitizer MLu, the optical penetration
	depths were longer: 0.92 +/- 0.63, 0.67 +/- 0.10, and 1.1 +/- 0.80
	cm for rectum, small bowel, and peritoneum, respectively. CONCLUSION:
	Low rectal stapled anastomosis is safe when performed with MLu-mediated
	pelvic PDT in a dog model. Significant tissue penetration of 730
	nm light into the rectum and pelvic sidewall was revealed without
	generation of significant toxicity or histological sequelae. Penetration
	depths of 730 nm light in pelvic tissue suggest that microscopic
	residual disease of less than 5 mm are likely to be treated adequately
	with MLu-mediated PDT. This approach merits further investigation
	as an adjuvant to total mesorectal excision and chemoradiation for
	rectal cancer.},
  doi = {10.1016/j.jss.2006.01.020},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/Hsing-WenWang/Ross:2006:J-Surg-Res:16650871.pdf}
}
@article{Shang2010MuscleFiber,
  author = {Yu Shang and T. B. Symons and Turgut Durduran and A. G. Yodh and
	Guoqiang Yu},
  title = {Effects of muscle fiber motion on diffuse correlation spectroscopy
	blood flow measurements during exercise},
  journal = {Biomed. Opt. Express},
  year = {2010},
  volume = {1},
  pages = {500--511},
  number = {2},
  month = {Sep},
  abstract = {The influence of muscle fiber motion during exercise on diffuse correlation
	spectroscopy (DCS) measurements of skeletal muscle blood flow is
	explored. Isotonic (with muscle fiber motion) and isometric (without
	muscle fiber motion) plantar flexion exercises were performed at
	30\% of maximal force on a dynamometer, and muscle blood flow was
	continuously monitored on the medial gastrocnemius (calf) muscle
	of a healthy volunteer using DCS. During exercise, dynamometer recordings
	including footplate position, footplate angular velocity, and plantar
	flexion torque were obtained. Muscle fiber motions introduced artifacts
	into the DCS signals, causing an overestimation of blood flow changes.
	We show how proper co-registration of dynamometer recordings and
	DCS measurements enables separation of the true blood flow responses
	during exercise from those affected by the motion artifacts.},
  doi = {10.1364/BOE.1.000500},
  keywords = {Medical optics and biotechnology; Light propagation in tissues; Medical
	and biological imaging; Spectroscopy, speckle},
  publisher = {OSA},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2010/shang2010-effects-of-muscle-fiber-motion.pdf}
}
@article{SolonenkoCBKGVZWHY02,
  author = {Solonenko, M. and Cheung, R. and Busch, T. M. and Kachur, A. and
	Griffin, G. M. and Vulcan, T. and Zhu, T. C. and Wang, H. W. and
	Hahn, S. M. and Yodh, A. G.},
  title = {In vivo reflectance measurement of optical properties, blood oxygenation
	and motexafin lutetium uptake in canine large bowels, kidneys and
	prostates},
  journal = {Physics In Medicine And Biology},
  year = {2002},
  volume = {47},
  pages = {857-873},
  doi = {10.1088/0031-9155/47/6/301},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/PDTrelated/MSolonenko2002PMBv47.pdf}
}
@article{ulasmouse2007,
  author = {Sunar, U and Makonnen, S and Zhou, C and Durduran, T and Yu, Guoqiang
	and Wang, H W and Lee, W M and Yodh, A G},
  title = {Hemodynamic responses to antivascular therapy and ionizing radiation
	assessed by diffuse optical spectroscopies},
  journal = {Opt Expr},
  year = {2007},
  volume = {15},
  pages = {15507-15516},
  number = {23},
  month = {November},
  doi = {10.1364/OE.15.015507},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/UlasSunar/ulassunar2007optexpr.pdf}
}
@article{Sunar:2006:J-Biomed-Opt:17212544,
  author = {Sunar, U and Quon, H and Durduran, T and Zhang, J and Du, J and Zhou,
	C and Yu, G and Choe, R and Kilger, A and Lustig, R and Loevner,
	L and Nioka, S and Chance, B and Yodh, A G},
  title = {Noninvasive diffuse optical measurement of blood flow and blood oxygenation
	for monitoring radiation therapy in patients with head and neck tumors:
	a pilot study},
  journal = {J Biomed Opt},
  year = {2006},
  volume = {11},
  pages = {064021-064021},
  number = {6},
  month = {Nov-Dec},
  abstract = {This pilot study explores the potential of noninvasive diffuse correlation
	spectroscopy (DCS) and diffuse reflectance spectroscopy (DRS) for
	monitoring early relative blood flow (rBF), tissue oxygen saturation
	(StO(2)), and total hemoglobin concentration (THC) responses to chemo-radiation
	therapy in patients with head and neck tumors. rBF, StO(2), and THC
	in superficial neck tumor nodes of eight patients are measured before
	and during the chemo-radiation therapy period. The weekly rBF, StO(2),
	and THC kinetics exhibit different patterns for different individuals,
	including significant early blood flow changes during the first two
	weeks. Averaged blood flow increases (52.7+/-9.7)\% in the first
	week and decreases (42.4+/-7.0)\% in the second week. Averaged StO(2)
	increases from (62.9+/-3.4)\% baseline value to (70.4+/-3.2)\% at
	the end of the second week, and averaged THC exhibits a continuous
	decrease from pretreatment value of (80.7+/-7.0) [muM] to (73.3+/-8.3)
	[muM] at the end of the second week and to (63.0+/-8.1) [muM] at
	the end of the fourth week of therapy. These preliminary results
	suggest daily diffuse-optics-based therapy monitoring is feasible
	during the first two weeks and may have clinical promise.},
  doi = {10.1117/1.2397548},
  pmid = {17212544},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/UlasSunar/SUNAR_JBO064021.pdf}
}
@article{tromberg2008MPV2020,
  author = {Bruce J. Tromberg and Brian W. Pogue and Keith D. Paulsen and Arjun
	G. Yodh and David A. Boas and Albert E. Cerussi},
  title = {Assessing the future of diffuse optical imaging technologies for
	breast cancer management},
  journal = {Medical Physics},
  year = {2008},
  volume = {35},
  pages = {2443-2451},
  number = {6},
  doi = {10.1118/1.2919078},
  publisher = {AAPM},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/BJTrombergMPvision2020.pdf}
}
@article{HwWangPESGYB,
  author = {Wang, HW. and Putt, M. E. and Emanuele, M. J. and Shin, D. B. and
	Glatstein, E. and Yodh, A. G. and Busch, T. M.},
  title = {Treatment-Induced Changes in Tumor Oxygenation Predict Photodynamic
	Therapy Outcome},
  journal = {Cancer Research},
  year = {2004},
  volume = {64},
  pages = {7553-7561},
  doi = {10.1158/0008-5472.CAN-03-3632},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/Hsing-WenWang/hwWangCancerResrPDT04.pdf}
}
@article{HwWangZPSMDMFGHY,
  author = {Wang, HW. and Zhu, T. C. and Putt, M. E. and Solonenko, M. and Metz,
	J. and Dimofte, A. and Miles, J. and Fraker, D. L. and Glatstein,
	E. and Hahn, S. M. and Yodh, A. G.},
  title = {Broadband reflectance measurement of light penetration, blood oxygenation,
	hemoglobin concentration, and drug concentration in humon intraperitoneal
	tissues before and after photodynamic therapy},
  journal = {Journal of Biomedical Optics},
  year = {2005},
  volume = {10},
  pages = {014004-1-13},
  doi = {10.1117/1.1854679},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/Hsing-WenWang/HW_Wang_JBO_2005_10_1_014004.pdf}
}
@article{Wang:2007:J-Biomed-Opt:17614731,
  author = {Wang, H W and Finlay, J C and Lee, K and Zhu, T C and Putt, M E and
	Glatstein, E and Koch, C J and Evans, S M and Hahn, S M and Busch,
	T M and Yodh, A G},
  title = {Quantitative comparison of tissue oxygen and motexafin lutetium uptake
	by ex vivo and noninvasive in vivo techniques in patients with intraperitoneal
	carcinomatosis},
  journal = {J Biomed Opt},
  year = {2007},
  volume = {12},
  pages = {034023-034023},
  number = {3},
  month = {May-Jun},
  doi = {10.1117/1.2743082},
  pmid = {17614731},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/Hsing-WenWang/hwwang2007jbo.pdf}
}
@article{Wang:2007:PhotoChemPhotoBiol,
  author = {Wang, H W and Rickter, E and Yuan, M and Wileyto, E P and Glatstein,
	E and Yodh, A G and Busch, T M},
  title = {Effect of Photosensitizer Doser on Fluence Rate Responses to Photodynamic
	Therapy},
  journal = {Photochem Photobiol},
  year = {2007},
  volume = {83},
  pages = {1-9},
  doi = {10.1111/j.1751-1097.2007.00139.x},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/Hsing-WenWang/HWW_PhotochemPhotobiol_2007.pdf}
}
@article{YangLLC97,
  author = {Yang, Y. and Liu, H. and Li, Xingde and Chance, B.},
  title = {Low-cost frequency-domain photon migration instrument for tissue
	spectroscopy, oximetry, and imaging},
  journal = {Opt. Eng.},
  year = {1997},
  volume = {36},
  pages = {1562-1569},
  doi = {10.1117/1.601354},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/XingdeLi/YYang97OptEng36.pdf}
}
@book{Yodh_Boas_Rev,
  title = {Functional Imaging with Diffusing Light},
  publisher = {CRC Press},
  year = {2003},
  editor = {Tuan Vo-Dinh},
  author = {A. G. Yodh and D. A. Boas},
  pages = {21/1-45},
  booktitle = {Biomedical Photonics Handbook},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/DavidBoas}
}
@article{YodhC95,
  author = {{Yodh}, A. and {Chance}, B.},
  title = {Spectroscopy and imaging with diffusing light},
  journal = {Physics Today},
  year = {1995},
  volume = {48},
  pages = {34-40},
  month = {March},
  doi = {10.1063/1.881445},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/All/yodhchancephysicstodayPTO000034.pdf}
}
@incollection{yu2011_ch10,
  author = {Yu, G. and Durduran, T. and Zhou, C. and Cheng, R. and Yodh, A.G.},
  title = {Near-Infrared Diffuse Correlation Spectroscopy for Assessment of
	Tissue Blood Flow},
  booktitle = {Handbook of Biomedical Optics},
  publisher = {CRC Press: Boca Raton},
  year = {2011},
  editor = {Boas, D.A. and Pitris, C. and Ramanujam, N.},
  pages = {195-216},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/2011/Handbook_Biomedical_Optics_chpt10.pdf}
}
@article{Yu:2006:Photochem-Photobiol:16696593,
  author = {Yu, G and Durduran, T and Zhou, C and Zhu, T C and Finlay, J C and
	Busch, T M and Malkowicz, S B and Hahn, S M and Yodh, A G},
  title = {Real-time In Situ Monitoring of Human Prostate Photodynamic Therapy
	with Diffuse Light},
  journal = {Photochem Photobiol},
  year = {2006},
  volume = {82},
  pages = {1279-84},
  month = {Oct},
  abstract = {Photodynamic therapy (PDT) requires oxygen to cause cellular and vascular
	tumor damage. Tissue oxygen concentration, in turn, is influenced
	by blood flow and blood oxygenation. Real- time clinical measurement
	of these hemodynamic quantities, however, is rare. This paper reports
	the development and application of a probe, combining diffuse reflectance
	spectroscopy (DRS) for measurement of tumor blood oxygenation and
	diffuse correlation spectroscopy (DCS) for measurement of tumor blood
	flow. The instrument was adapted for clinical use during interstitial
	prostate PDT. Three patients with locally recurrent prostate cancer
	received 2 mg/kg motexafin lutetium (MLu) 3 hours before illumination
	and a total light dose of 100 J/cm(2) at 150 mW/cm. Prostrate blood
	oxygen saturation (StO2) decreased only slightly ( approximately
	3\%) after treatment. On the other hand, prostate blood flow and
	total hemoglobin concentration over the course of PDT decreased by
	50\% and 15\%, respectively, suggesting MLu-mediated PDT has an anti-vascular
	effect. While it is certainly impossible to draw definite conclusions
	from measurements of only three patients, the observed differences
	in tumor blood flow and blood oxygenation responses during PDT can,
	in principle, be used to choose among tissue oxygen consumption models
	and therefore emphasize the potential clinical value for simultaneous
	monitoring of both parameters.},
  doi = {10.1562/2005-10-19-RA-721},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/GuoqingYu/Yu:2006:Photochem-Photobiol:16696593.pdf}
}
@article{YuFDZWDY07,
  author = {Yu, G. and Floyd, T. F. and Durduran, T. and Zhou, C. and Wang, J.
	and Detre, J. A. and Yodh, A. G.},
  title = {Validation of diffuse correlation spectroscopy for muscle blood flow
	with concurrent arterial spin labeled perfusion MRI},
  journal = {Optics Express},
  year = {2007},
  volume = {15},
  pages = {1064-1075},
  doi = {10.1364/OE.15.001064},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/GuoqingYu/YuFDZWDY07opticsExp.pdf}
}
@article{YuDFGY03,
  author = {Yu, G. Q. and Durduran, T. and Furuya, D. and Greenberg, J. H. and
	Yodh, A. G.},
  title = {Frequency-domain multiplexing system for in vivo diffuse light measurements
	of rapid cerebral hemodynamics},
  journal = {Applied Optics},
  year = {2003},
  volume = {42},
  pages = {2931-2939},
  doi = {10.1364/AO.42.002931},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/GuoqingYu/GYAO2003.pdf}
}
@article{YuDLZCMY05,
  author = {Yu, G. Q. and Durduran, T. and Lech, G. and Zhou, C. and Chance,
	B. and Mohler, R. E. and Yodh, A. G.},
  title = {Time-dependent blood flow and oxygenation in human skeletal muscles
	measured with noninvasive near-infrared diffuse optical spectroscopies},
  journal = {Journal of Biomedical Optics},
  year = {2005},
  volume = {10},
  pages = {024027-1-12},
  doi = {10.1117/1.1884603},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/GuoqingYu/Guoqiang-Muscle-Paper.pdf}
}
@article{YuDZWPSSGYB05,
  author = {Yu, G. Q. and Durduran, T. and Zhou, C. and Wang, HW. and Putt, M.
	E. and Saunders, H. M. and Sehgal, C. M. and Glatstein, E. and Yodh,
	A. G. and Busch, T. M.},
  title = {Noninvasive Monitoring of Murine Tumor Blood Flow During and After
	Photodynamic Therapy Provides Early Assessment of Therapeutic Efficacy},
  journal = {Clin Cancer Research},
  year = {2005},
  volume = {11},
  pages = {3543-3552},
  doi = {10.1158/1078-0432.CCR-04-2582},
  url = {http://www.lrsm.upenn.edu/pmi/papers/AGYgroup/GuoqingYu/guoqiang-PDT.pdf}
}
@article{zhou2009JBO14,
  author = {Chao Zhou and Stephanie A. Eucker and Turgut Durduran and Guoqiang
	Yu and Jill Ralston and Stuart H. Friess and Rebecca N. Ichord and
	Susan S. Margulies and Arjun G. Yodh},
  title = {Diffuse optical monitoring of hemodynamic changes in piglet brain
	with closed head injury},
  journal = {Journal of Biomedical Optics},
  year = {2009},
  volume = {14},
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