The Laboratory for Research on the Structure of Matter (LRSM)

PUBLICATIONS

primary support / partial support / shared experimental facilities

 

2011 Publications

Primary Support, 2011

  • Alsayed, A.M., Han, Y. and Yodh, A.G. Melting and geometric frustration in temperature-sensitive colloids in Microgel Suspensions (A. Fernandez-Nieves, Wyss, H.M., Mattsson, J., and Weitz, D.A., ed.) Wiley-VCH: Weinheim, Germany, pp. 229-281 (2011).

  • Basu, A., Wen, Q., Mao, X., Lubensky, T.C., Janmey, P.A. and Yodh, A.G. Nonaffine displacements in flexible polymer networks. Macromolecules 44, 1671-1679, doi:10.1021/ma1026803 (2011).

  • Chen, A.B.K., Kim, S.G., Wang, Y.D., Tung, W.S. and Chen, I.W. A size-dependent nanoscale metal-insulator transition in random materials. Nat. Nanotechnol. 6, 237-241, doi:10.1038/nnano.2011.21 (2011).

  • Huisman, E.M. and Lubensky, T.C. Internal stresses, normal modes, and nonaffinity in three-dimensional biopolymer networks. Phys. Rev. Lett. 106, 088301, doi:10.1103/PhysRevLett.106.088301 (2011).

  • Kim, J.S., Lee, S., Gorte, R.J. and Vohs, J.M. Substrate-mediated spreading and phase segregation at LSM-Zirconia interfaces. J. Electrochem. Soc. 158, B79-B83, doi:10.1149/1.3507286 (2011).

  • Robbins, G.P., Lee, D., Katz, J.S., Frail, P.R., Therien, M.J., Crocker, J.C. and Hammer, D.A. Effects of membrane rheology on leuko-polymersome adhesion to inflammatory ligands. Soft Matter 7, 769-779, doi:10.1039/c0sm00554a (2011).

  • Shokef, Y., Souslov, A. and Lubensky, T.C. Order by disorder in the antiferromagnetic Ising model on an elastic triangular lattice. Proc. Natl. Acad. Sci. U. S. A. 108, 11804-11809, doi:10.1073/pnas.1014915108 (2011).

  • White, S.I., Vora, P.M., Kikkawa, J.M. and Winey, K.I. Resistive switching in bulk silver nanowire–polystyrene composites. Adv. Func. Mater. 21, 233-240, doi:10.1002/adfm.201001383 (2011).

*acknowledges use of Shared Experimental Facilities

Partial Support, 2011

  • Baumgart, T., Capraro, B.R., Zhu, C. and Das, S.L. Thermodynamics and mechanics of membrane curvature generation and Sensing by Proteins and Lipids. Annu. Rev. Phys. Chem. 62, 483-506, doi:10.1146/annurev.physchem.012809.103450 (2011).

  • Castagna, A.M., Wang, W.Q., Winey, K.I. and Runt, J. Influence of cation type on structure and dynamics in sulfonated polystyrene ionomers. Macromolecules 44, 5420-5426, doi:10.1021/ma2009657 (2011).

  • Dong, A.G., Chen, J., Oh, S.J., Koh, W.K., Xiu, F.X., Ye, X.C., Ko, D.K., Wang, K.L., Kagan, C.R. and Murray, C.B. Multiscale periodic assembly of striped nanocrystal super lattice films on a liquid surface. Nano Lett. 11, 841-846, doi:10.1021/nl104208x (2011).

  • Dong, A.G., Ye, X.C., Chen, J., Kang, Y.J., Gordon, T., Kikkawa, J.M. and Murray, C.B. A generalized ligand-exchange strategy enabling sequential surface functionalization of colloidal nanocrystals. J. Am. Chem. Soc. 133, 998-1006, doi:10.1021/ja108948z (2011).

  • Fadeev, A.Y. and DeGrado, W.F. Lipid membranes supported on optically transparent nanosilicas: Synthesis and application in characterization of protein-membrane interactions. J. Colloid Interface Sci. 355, 265-268, doi:10.1016/j.jcis.2010.11.064 (2011).

  • Gam, S., Meth, J.S., Zane, S.G., Chi, C.Z., Wood, B.A., Seitz, M.E., Winey, K.I., Clarke, N. and Composto, R.J. Macromolecular diffusion in a crowded polymer nanocomposite. Macromolecules 44, 3494-3501, doi:10.1021/ma102463q (2011).

  • Grigoryan, G., Kim, Y.H., Acharya, R., Axelrod, K., Jain, R.M., Willis, L., Drndic, M., Kikkawa, J.M. and DeGrado, W.F. Computational design of virus-like protein assemblies on carbon nanotube surfaces. Science 332, 1071-1076, doi:10.1126/science.1198841 (2011).

  • Guo, L., Smith-Dupont, K.B. and Gai, F. Diffusion as a probe of peptide-induced membrane domain formation. Biochemistry 50, 2291-2297, doi:10.1021/bi102068j (2011).

  • Haxton, T.K., Schmiedeberg, M. and Liu, A.J. Universal jamming phase diagram in the hard-sphere limit. Phys. Rev. E 83, 031503, doi:10.1103/PhysRevE.83.031503 (2011).

  • Hickey, R.J., Haynes, A.S., Kikkawa, J.M. and Park, S.J. Controlling the self-assembly structure of magnetic nanoparticles and amphiphilic block-copolymers: From micelles to vesicles. J. Am. Chem. Soc. 133, 1517-1525, doi:10.1021/ja1090113 (2011).

  • Hribar, K.C., Lee, M.H., Lee, D. and Burdick, J.A. Enhanced release of small molecules from near-infrared light responsive polymer−nanorod composites. ACS Nano, null-null, doi:10.1021/nn103575a (2011).

  • Jilek, R.E., Spencer, L.P., Kuiper, D.L., Scott, B.L., Williams, U.J., Kikkawa, J.M., Schelter, E.J. and Boncella, J.M. A general and modular synthesis of monoimidouranium(IV) dihalides. Inorg. Chem. 50, 4235-4237, doi:10.1021/ic200377b (2011).

  • Jung, Y., Agarwal, R. and Yang, C.Y. Chalcogenide phase-change memory nanotubes for lower writing current operation. Nanotechnology 22, 254012, doi:10.1088/0957-4484/22/25/254012 (2011).

  • Jung, Y.W., Nam, S.W. and Agarwal, R. High-resolution transmission electron microscopy study of electrically-driven reversible phase change in Ge2Sb2Te5 nanowires. Nano Lett. 11, 1364-1368, doi:10.1021/nl104537c (2011).

  • Kamat, N.P., Katz, J.S. and Hammer, D.A. Engineering polymersome protocells. J. Phys. Chem. Lett. 2, 1612-1623, doi:10.1021/jz200640x (2011).

  • Kang, Y.K., Iovine, P.M. and Therien, M.J. Electron transfer reactions of rigid, cofacially compressed, Π-stacked porphyrin-bridge-quinone systems. Coord. Chem. Rev. 255, 804-824, doi:10.1016/j.ccr.2010.12.011 (2011).

  • Kim, J.S., Wieder, N.L., Abraham, A.J., Cargnello, M., Fornasiero, P., Gorte, R.J. and Vohs, J.M. Highly active and thermally stable core-shell catalysts for solid oxide fuel cells. J. Electrochem. Soc. 158, B596-B600, doi:10.1149/1.3571039 (2011).

  • Ko, D.K., Kang, Y.J. and Murray, C.B. Enhanced thermopower via carrier energy filtering in solution-processable Pt-Sb2Te3 nanocomposites. Nano Lett. 11, 2841-2844, doi:10.1021/nl2012246 (2011).

  • Ko, D.K. and Murray, C.B. Probing the Fermi energy level and the density of states distribution in PbTe nanocrystal (Quantum Dot) solids by temperature-dependent thermopower measurements. Acs Nano 5, 4810-4817, doi:10.1021/nn2007817 (2011).

  • Korendovych, I.V., Shandler, S.J., Montalvo, G.L. and DeGrado, W.F. Environment- and sequence-dependence of helical type in membrane-spanning peptides composed of Β3-amino acids. Org. Lett. 13, 3474-3477, doi:10.1021/ol201218y (2011).

  • Kungas, R., Kim, J.S., Vohs, J.M. and Gorte, R.J. Restructuring porous YSZ by treatment in hydrofluoric acid for use in SOFC cathodes. J. Am. Ceram. Soc. 94, 2220-2224, doi:10.1111/j.1551-2916.2010.04359.x (2011).

  • Mu, M.F., Seitz, M.E., Clarke, N., Composto, R.J. and Winey, K.I. Polymer tracer diffusion exhibits a minimum in nanocomposites containing spherical nanoparticles. Macromolecules 44, 191-193, doi:10.1021/ma1019818 (2011).

  • Nga, H.N., Rosen, B.M. and Percec, V. Improving the initiation efficiency in the single electron transfer living radical polymerization of methyl acrylate with electronic chain-end mimics. J. Polym. Sci. Pol. Chem. 49, 1235-1247, doi:10.1002/pola.24543 (2011).

  • Nguyen, N.H., Rosen, B.M. and Percec, V. Improving the initiation efficiency in the single electron transfer living radical polymerization of methyl acrylate with electronic chain-end mimics. J. Polym. Sci. Pol. Chem. 49, 1235-1247, doi:10.1002/pola.24543 (2011).

  • Nucci, N.V., Pometun, M.S. and Wand, A.J. Site-resolved measurement of water-protein interactions by solution NMR. Nat. Struct. Mol. Biol. 18, 245-U315, doi:10.1038/nsmb.1955 (2011).

  • Ombelli, M., Costello, L., Postle, C., Anantharaman, V., Meng, Q.C., Composto, R.J. and Eckmann, D.M. Competitive protein adsorption on polysaccharide and hyaluronate modified surfaces. Biofouling 27, 505-518, doi:10.1080/08927014.2011.585711 (2011).

  • Pantano, D.A., Klein, M.L., Discher, D.E. and Moore, P.B. Morphologies of charged diblock copolymers simulated with a neutral coarse-grained model. J. Phys. Chem. B 115, 4689-4695, doi:10.1021/jp201085c (2011).

  • Peng, Y., Wang, Z.-R., Alsayed, A.M., Yodh, A.G. and Han, Y. Melting of multilayer colloidal crystals confined between two walls. Phys. Rev. E 83, 011404, doi:10.1103/PhysRevE.83.011404 (2011).

  • Peterca, M., Imam, M.R., Ahn, C.H., Balagurusamy, V.S.K., Wilson, D.A., Rosen, B.M. and Percec, V. Transfer, amplification, and inversion of helical chirality mediated by concerted interactions of C-3-supramolecular dendrimers. J. Am. Chem. Soc. 133, 2311-2328, doi:10.1021/ja110753s (2011).

  • Remorino, A., Korendovych, I.V., Wu, Y.B., DeGrado, W.F. and Hochstrasser, R.M. Residue-specific vibrational echoes yield 3D structures of a transmembrane helix dimer. Science 332, 1206-1209, doi:10.1126/science.1202997 (2011).

  • Rogers, J.M.G., Poishchuk, A.L., Guo, L., Wang, J., DeGrado, W.F. and Gai, F. Photoinduced electron transfer and fluorophore motion as a probe of the conformational dynamics of membrane proteins: Application to the influenza A M2 proton channel. Langmuir 27, 3815-3821, doi:10.1021/la200480d (2011).

  • Rosen, B.M., Peterca, M., Morimitsu, K., Dulcey, A.E., Leowanawat, P., Resmerita, A.M., Imam, M.R. and Percec, V. Programming the supramolecular helical polymerization of dendritic dipeptides via the stereochemical information of the dipeptide. J. Am. Chem. Soc. 133, 5135-5151, doi:10.1021/ja200280h (2011).

  • Rosen, B.M., Quasdorf, K.W., Wilson, D.A., Zhang, N., Resmerita, A.M., Garg, N.K. and Percec, V. Nickel-catalyzed cross-couplings involving carbon-oxygen bonds. Chem. Rev. 111, 1346-1416, doi:10.1021/cr100259t (2011).

  • Samish, I., MacDermaid, C.M., Perez-Aguilar, J.M. and Saven, J.G. Theoretical and computational protein sesign. Annu. Rev. Phys. Chem. 62, 129-149, doi:10.1146/annurev-physchem-032210-103509 (2011).

  • Sanchez-Gaytan, B.L., Li, S., Kamps, A.C., Hickey, R.J., Clarke, N., Fryd, M., Wayland, B.B. and Park, S.-J. Controlling the radial position of nanoparticles in amphiphilic block-copolymer assemblies. J. Phys. Chem. C 115, 7836-7842, doi:10.1021/jp1087543 (2011).

  • Saven, J.G. Computational protein design: engineering molecular diversity, nonnatural enzymes, nonbiological cofactor complexes, and membrane proteins. Curr. Opin. Chem. Biol. 15, 452-457, doi:10.1016/j.cpa.2011.03.014 (2011).

  • Susumu, K., Fisher, J.A.N., Zheng, J.R., Beratan, D.N., Yodh, A.G. and Therien, M.J. Two-photon absorption properties of proquinoidal D-A-D and A-D-A quadrupolar chromophores. J. Phys. Chem. A 115, 5525-5539, doi:10.1021/jp2000738 (2011).

  • Tee, S.-Y., Fu, J., Chen, C.S. and Janmey, P.A. Cell shape and substrate rigidity both regulate cell stiffness. Biophys. J. 100, L25-L27, doi:DOI: 10.1016/j.bpj.2010.12.3744 (2011).

  • Tettey, K.E., Ho, J.W.C. and Lee, D. Modulating layer-by-layer assembly of oppositely charged nanoparticles using a short amphiphilic molecule. J. Phys. Chem. C 115, 6297-6304, doi:10.1021/jp112386n (2011).

  • Tong, W., Huang, F.-Q. and Chen, I.-W. Electron localization and magnetism in SrRuO3 with non-magnetic cation substitution. J. Phys.: Condens. Matter 23, 086005, doi:10.1088/0953-8984/23/8/086005 (2011).

  • Vajpayee, S., Khare, K., Yang, S., Hui, C.-Y. and Jagota, A. Adhesion selectivity using rippled surfaces. Adv. Funct. Mater. 21, 547-555, doi:10.1002/adfm.201001652 (2011).

  • Verneuil, E. and Durian, D.J. Permeability of mixed soft and hard granular material: Hydrogels as drainage modifiers. Eur. Phys. J. E 34, 65, doi:10.1140/epje/i2011-11065-0 (2011).

  • Wang, S., Querner, C., Dadosh, T., Crouch, C.H., Novikov, D.S. and Drndic, M. Collective fluorescence enhancement in nanoparticle clusters. Nature Communications 2, 364, doi:10.1038/ncomms1357 (2011).

  • West, D.V. and Davies, P.K. Triclinic and monoclinic structures of SrLaCuNbO6 and SrLaCuTaO6 double perovskites. J. Appl. Crystallogr. 44, 595-602, doi:10.1107/s0021889811012131 (2011).

  • Wyss, H.M., Henderson, J.M., Byfield, F.J., Bruggeman, L.A., Ding, Y.X., Huang, C.F., Suh, J.H., Franke, T., Mele, E., Pollak, M.R., Miner, J.H., Janmey, P.A., Weitz, D.A. and Miller, R.T. Biophysical properties of normal and diseased renal glomeruli. Am. J. Physiol.-Cell Physiol. 300, C397-C405, doi:10.1152/ajpcell.00438.2010 (2011).

  • Yang, M.T., Fu, J., Wang, Y.-K., Desai, R.A. and Chen, C.S. Assaying stem cell mechanobiology on microfabricated elastomeric substrates with geometrically modulated rigidity. Nat. Protocols 6, 187-213, doi:10.1038/nprot.2010.189 (2011).

  • Yoo, J.W., Irvine, D.J., Discher, D.E. and Mitragotri, S. Bio-inspired, bioengineered and biomimetic drug delivery carriers. Nat. Rev. Drug Discov. 10, 521-535, doi:10.1038/nrd3499 (2011).

  • Yunker, P.J., Chen, K., Zhang, Z.X., Ellenbroek, W.G., Liu, A.J. and Yodh, A.G. Rotational and translational phonon modes in glasses composed of ellipsoidal particles. Phys. Rev. E 83, 011403, doi:10.1103/PhysRevE.83.011403 (2011).

  • Yunker, P.J., Chen, K., Zhang, Z.X. and Yodh, A.G. Phonon spectra, nearest neighbors, and mechanical stability of disordered colloidal clusters with attractive interactions. Phys. Rev. Lett. 106, 225503, doi:10.1103/PhysRevLett.106.225503 (2011).

  • Yunker, P.J., Still, T., Lohr, M.A. and Yodh, A.G. Suppression of the coffee-ring effect by shape-dependent capillary interactions. Nature 476, 308-311, doi:10.1038/nature10344 (2011).

*acknowledges use of Shared Experimental Facilities

Shared Experimental Facilities, 2011

  • Green, M.D., Allen Jr, M.H., Dennis, J.M., Cruz, D.S.-d.l., Gao, R., Winey, K.I. and Long, T.E. Tailoring macromolecular architecture with imidazole functionality: A perspective for controlled polymerization processes. Eur. Poly. J. 47, 486-496, doi:DOI: 10.1016/j.eurpolymj.2010.09.035 (2011).

  • Ishizuka, T., Sinks, L.E., Song, K., Hung, S.-T., Nayak, A., Clays, K. and Therien, M.J. The roles of molecular structure and effective optical symmetry in evolving dipolar chromophoric building blocks to potent octopolar nonlinear optical chromophores. J. Am. Chem. Soc. 133, 2884-2896, doi:10.1021/ja105004k (2011).

  • Lee, M., Choi, U.H., Salas-de la Cruz, D., Mittal, A., Winey, K.I., Colby, R.H. and Gibson, H.W. Imidazolium polyesters: Structure-property relationships in thermal behavior, ionic conductivity, and morphology. Adv. Funct. Mater. 21, 708-717, doi:10.1002/adfm.201001878 (2011).


     
 
Soft Matters Cover, 4/7/10
Soft Matters, April 7,2010
Michael L. Kein,
Randy D. Kamien,
Dennis E. Discher, et al
 
 
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